Gloome 2.0
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GLOOME :
Gain Loss Mapping Engine
Interactive Tree
Hover over a node to view basic info
Click on a node or branch to open a detailed table
Pinch with two fingers on a trackpad to zoom in/out
Drag with your mouse to move the tree
Ancestral Comparison
P = maintained presence;
A = maintained absence
L = loss
G = gain
show distance to parent
show radial tree
Add a phyletic pattern MSA in FASTA format via text input or file upload (
FASTA format
)
?
Add a phylogenetic tree in Newick format via text input or file upload (
Newick format
)
?
e-mail
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Advanced Options
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Frequency π1
π1 value
optimize π1 value (algorithmic)
optimize π1 value (empirical)
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Γ (Gamma) distribution
Γ distribution α value
optimize α value
number of rate categories
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BL (branch lengths) optimization
BL coefficient
optimize BL coefficient
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CoPAP (Co-evolution of presence-absence patterns)
probability of loss/gain event
number of loss/gain events
number of simulated datasets
don`t use CoPAP
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Rooting method
rooting method
Minimal Ancestor Deviation
Minimum Variance Rooting
Midpoint Rooting
Outgroup Rooting
leaf
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Results files
interactive tree (html)
newick tree (png)
table of coevolution (tsv)
simulated datasets (fastas)
barplot of correlation (svg)
plot of correlation (svg)
plot of correlation by rate-bin (svg)
table of posterior rates (tsv)
table of pearson correlation (tsv)
table of nodes (tsv)
branch position probabilities (tsv)
table of branches (tsv)
log-likelihood (tsv)
tree attributes (tsv)
parsimony and homoplasy scores (tsv)
phylogenetic tree (nwk)