Gloome 2.0
Home
Overview
Documentation
Gallery
Source code
Citing & credits
GLOOME :
Gain Loss Mapping Engine
Interactive Tree
Hover over a node to view basic info
Click on a node or branch to open a detailed table
Pinch with two fingers on a trackpad to zoom in/out
Drag with your mouse to move the tree
Ancestral Comparison
P = maintained presence;
A = maintained absence
L = loss
G = gain
show distance to parent
show radial tree
Add a phyletic pattern MSA in FASTA format via text input or file upload (
FASTA format
)
?
Add a phylogenetic tree in Newick format via text input or file upload (
Newick format
)
?
e-mail
▼
Advanced Options
▽
Frequency π1
π1 value
optimize π1 value (algorithmic)
optimize π1 value (empirical)
▽
Γ (Gamma) distribution
Γ distribution α value
optimize α value
number of rate categories
▽
BL (branch lengths) optimization
BL coefficient
optimize BL coefficient
optimize each branch length
▽
CoPAP (Co-evolution of presence-absence patterns)
probability of loss/gain event
number of loss/gain events
number of simulated datasets
don`t use CoPAP
▽
Rooting method
rooting method
Minimal Ancestor Deviation
Minimum Variance Rooting
Midpoint Rooting
Outgroup Rooting
leaf
▽
Results files
log-likelihood (tsv)
table of nodes (tsv)
table of branches (tsv)
branch position probabilities (tsv)
table of coevolution (tsv)
parsimony and homoplasy scores (tsv)
table of posterior rates (tsv)
table of pearson correlation (tsv)
tree attributes (tsv)
branch length models (tsv
phylogenetic tree (nwk)
simulated datasets (fastas)
barplot of correlation (svg)
plot of correlation by rate-bin (svg)
plot of correlation (svg)
interactive tree (html)
newick tree (png)